 ActivityTemplates | ActivityTemplates - Compute activity templates from PCA of spike trains. |
| AngularVelocity | AngularVelocity - Compute instantaneous angular velocity. |
| BrainStates | BrainStates - Determine brain state using LFP, EMG and movement. |
| CCG | CCG - Compute multiple cross- and auto-correlograms, or cross-covariances |
| CCGParameters | CCGParameters - Reformat time series for CCG computation |
| CSD | CSD - Compute current source density. |
| CV | CV - Compute coefficient of variation for a point process. |
| CofiringCoefficient | CofiringCoefficient - Compute the cofiring coefficient between two sets of intervals. |
| CoherenceBands | CoherenceBands - Determine running coherence in physiological bands. |
| CompareDistributions | CompareDistributions - Compare two N-dimensional distributions (e.g. prospective place fields). |
| Contents | Specialized analyses for FMAToolbox. |
| CountSpikesPerCycle | CountSpikesPerCycle - Count number of spikes per LFP cycle. |
| DefineZone | DefineZone - Define a restricted zone to which analyses can be circumscribed. |
| Distance | Distance - Compute instantaneous distance to a reference point. |
| FieldPSP | FieldPSP - Measure field EPSPs (waveforms, slope, amplitude) across time. |
| FieldShift | FieldShift - Estimate firing field shifts between two conditions. |
| FilterLFP | FilterLFP - Filter the local field potentials, e.g. in the theta band. |
| FindDeltaWaves | FindDeltaWaves - Find cortical delta waves (1-6Hz waves). |
| FindRipples | FindRipples - Find hippocampal ripples (100~200Hz oscillations). |
| FindSpikeTrains | FindSpikeTrains - Split long spike trains into 'active' periods. |
| FindSpindles | FindSpindles - Find thalamo-cortical spindles (9-17Hz oscillations). |
| FindSubcycles | FindSubcycles - Find timestamps for subcycles of an oscillating signal. |
| FiringCurve | FiringCurve - Compute firing curve (e.g. for a head direction cell). |
| FiringMap | FiringMap - Compute firing map (e.g. for a place cell). |
| FitCCG | FitCCG - Fit dampened sinewave to the cross-correlogram of a pair of theta-modulated cells. |
| Frequency | Frequency - Compute instantaneous frequency for a point process (e.g. a spike train). |
| FunctionalClustering | FunctionalClustering - Determine spike train similarity tree using FCA analysis. |
| GenerateSpikeTrain | GenerateSpikeTrain - Generate spike train using a leaky integrate and fire neuron model. |
| IsInZone | IsInZone - Test when the animal is in a given zone. |
| IsolationDistance | IsolationDistance - Determine the isolation quality for one or more clusters. |
| LinearVelocity | LinearVelocity - Compute instantaneous linear velocity. |
| MTCoherence | MTCoherence - Compute LFP coherence by multi-taper estimation. |
| MTCoherogram | MTCoherogram - Compute LFP coherogram by multi-taper estimation. |
| MTPointSpectrogram | MTPointSpectrogram - Compute point process spectrogram by multi-taper estimation. |
| MTPointSpectrum | MTPointSpectrum - Compute point process spectrum by multi-taper estimation. |
| MTSpectrogram | MTSpectrogram - Compute LFP spectrogram by multi-taper estimation. |
| MTSpectrum | MTSpectrum - Compute LFP spectrum by multi-taper estimation. |
| Map | Map - Map z on (x,y) where x, y and z are time-varying variables (samples). |
| MapStats | MapStats - Compute statistics for a map Z = f(X,Y), or a curve Z = f(X). |
| NormalizeFields | NormalizeFields - Normalize one or more firing fields in space and rate. |
| PETHTransition | PETHTransition - Find a transition point in a peri-event time histogram (PETH). |
| Phase | Phase - Compute instantaneous phase in signal. |
| PhaseCurve | PhaseCurve - Compute spatial phase curve. |
| PhaseMango | PhaseMango - Compute phase as a function of spike rate and acceleration. |
| PhaseMap | PhaseMap - Compute spatial phase map. |
| PhasePrecession | PhasePrecession - Compute spike phase precession. |
| QuietPeriods | QuietPeriods - Find periods of immobility. |
| RadialMaze | RadialMaze - Compute simple statistics for the 8-arm radial maze task. |
| RadialMazeTurns | RadialMazeTurns - Compute distribution of successive turn angles in radial maze. |
| ReactivationStrength | ReactivationStrength - Assess reactivation strength of cell assemblies. |
| ReconstructPosition | ReconstructPosition - Bayesian reconstruction of positions from spike trains. |
| RemoveArtefacts | RemoveArtefacts - Remove artefacts from local field potentials. |
| RippleStats | RippleStats - Compute descriptive stats for ripples (100~200Hz oscillations). |
| SelectSpikes | SelectSpikes - Discriminate bursts vs single spikes. |
| ShortTimeCCG | ShortTimeCCG - Time-varying auto/cross-correlograms of point processes. |
| SpectrogramBands | SpectrogramBands - Determine running power in physiological bands. |
| SurveyCCG | SurveyCCG - Compute and plot cross-correlograms (CCGs) for all subsessions. |
| SurveyFiringMaps | SurveyFiringMaps - Compute and plot firing maps for all subsessions. |
| SurveyPhasePrecession | SurveyPhasePrecession - Compute and plot phase precession plots for all subsessions. |
| SurveyTuningCurves | SurveyTuningCurves - Compute and plot tuning curves for all subsessions. |
| Sync | Sync - Make sample timestamps relative to synchronizing events. |
| SyncHist | SyncHist - Compute a histogram on event-synchronized samples (e.g. a PSTH). |
| SyncMap | SyncMap - Create a map from successive event-synchronized data. |
| TestRemapping | TestRemapping - Test if firing fields remap (or shift) between two conditions. |
| TestSkewness | TestSkewness - Test if firing field skewness changes between two conditions. |
| ThresholdSpikes | ThresholdSpikes - Post-hoc threshold correction for spike detection. |
| TimeToPhase | TimeToPhase - Resample signal as a function of unwrapped phase. |
| TuneArtefactTimes | TuneArtefactTimes - Fine-tune artefact (e.g. stimulation) times. |
Master index